[Bioperl-l] Bio::SeqIO fastq
Hang
hangsyin at gmail.com
Wed Feb 20 00:20:18 UTC 2008
Hi,
I'd like to read and write fastq entry. I don't know what is wrong with the
following code:
use Bio::SeqIO;
my $in = Bio::SeqIO->new(-format => "fastq",
-file => "test.fq");
while( my $seq = $in->next_seq ) {
my $qual = $seq->qual;
print $qual;
}
my test.fq file:
@test
AAAAA
+test
IIIII
I got "Can't locate method 'qual' via package "AAAAA", perhaps you forgot to
load "AAAAA?" at line XX ".
Thanks
Hang
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