[Bioperl-l] Re trieve ID tag in GFF3
Hang
hangsyin at gmail.com
Thu Feb 14 03:10:54 UTC 2008
Dear All,
I wonder what method I should call to retrieve values of ID tags in GFF3
format. For example, a GFF3 entry in the database is like this:
4 FlyBase gene 24068 25621 . + .
ID=FBgn0040037;Name=ABC;Ontology_term=...
I'd like to retrieve the scalar value 'FBgn0040037' to compare with another
value. Please complete the code below:
use Bio::DB::SeqFeature::Store;
my $db = Bio::DB::SeqFeature::Store->new(-adaptor => 'DBI::mysql',
-dsn => 'dbi:mysql:XXX_gff',
-user => 'XXX',
-pass => 'XXX')|| die "Database
open failed";
???
Thanks alot!
Hang
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