[Bioperl-l] error in build.pl of bioperl-live
Ryan Golhar
golharam at umdnj.edu
Sat Feb 9 02:01:45 UTC 2008
I just obtained the latest build of bioperl from svn. When I run 'perl
Build.pl', I get an error "Use of uninitialized value in concatenation
(.) or string at Build.PL line 184.". Here's the output I see (The
error is at the end):
[golharam at hydrogen bioperl-live]$ perl Build.PL
Checking prerequisites...
Install [a]ll optional external modules, [n]one, or choose
[i]nteractively? [n]
* Optional prerequisite Ace is not installed
(wanted for access of ACeDB database, used by Bio::DB::Ace and
Bio::DB::GFF::
Adaptor::ace)
* Optional prerequisite Algorithm::Munkres is not installed
(wanted for Phylogenetic Networks, used by Bio::PhyloNetwork)
* Optional prerequisite Math::Random is not installed
(wanted for Random Phylogenetic Networks, used by
Bio::PhyloNetwork::RandomFactory)
* Optional prerequisite GraphViz is not installed
(wanted for Phylogenetic Network Visulization, used by
Bio::PhyloNetwork::GraphViz)
* Class::AutoClass (0.091) is installed, but we prefer to have 1
(wanted for creating objects, used by Bio::Graph::SimpleGraph,
Bio::Graph::SimpleGraph::Traversal and Bio::Graph::ProteinGraph)
* Optional prerequisite Array::Compare is not installed
(wanted for Phylogenetic Networks, used by Bio::PhyloNetwork)
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the
versions
of the modules indicated above before proceeding with this installation
Checking features:
Network..................enabled
BioDBSeqFeature_mysql....enabled
BioDBGFF.................enabled
BioDBSeqFeature_BDB......enabled
Do you want to run the BioDBGFF or BioDBSeqFeature_mysql live database
tests? y/
n [n] n
- will not run the BioDBGFF live database tests
Use of uninitialized value in concatenation (.) or string at Build.PL
line 184.
Install [a]ll Bioperl scripts, [n]one, or choose groups [i]nteractively?
[a]
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