[Bioperl-l] alignment by TCoffee as a subroutine

[sergei ryazansky]

Hi all!

I am trying to perform TCoffe aligment by  
Bio::Tools::Run::Alignment::TCoffee wrapper as subroutine into the script.  
This subroutine works fine, but it is not single subroutine - there are a  
lot of other ones in the script. The problem is when compilation of script  
finish execution (nb! successful execution) of tcoffee subroutine the  
compiliation of the end of the script also interrupted. It seems that the  
tcoffee program itself induce interraption of perl compilation. Is it  
possible to pass this problem?

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