[Bioperl-l] bioperl-run gumby tests fail for me

[Sendu Bala]

Albert Vilella wrote:
> Hi all,
> 
> I was looking at the Gumby runnable, which is pretty cool. But I got
> an error when running the tests (see below). Can other people
> reproduce this?
> 
> It seems to me that the runnable is expecting a tree object, not the 
> filename for a tree...

No, most likely this is another thing broken by the SeqFeature changes.
I'm going to go ahead and try out some of my proposals in the
'Bio::SeqFeature::Annotated API change' thread.