[Bioperl-l] ClustalW Score?

Jason Stajich jason at bioperl.org
Thu May 31 18:08:19 UTC 2007

you're right --- it is not really my code, I was just elaborating  
Kevin's example --- it would probably need to be more specific or  
perhaps the last Score seen is sufficient for what one is trying to  

On May 31, 2007, at 2:54 AM, Sendu Bala wrote:

> Jason Stajich wrote:
>>    $score = $1 if ($_ =~ /Score:(\d+)/);
> I see that there are lots of lines in the output that match the  
> above regex, but there is also a single /Alignment Score (\d+)/  
> line printed at the end. Isn't that the score that should get  
> stored in $aln->score()?

Jason Stajich
jason at bioperl.org

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