[Bioperl-l] Writing OBO fiies

[Chris Fields]

Sounds great to me!  Sohel Merchant might have some ideas...

chris

On May 17, 2007, at 1:46 AM, Heikki Lehvaslaiho wrote:

>
> I've started putting together Bio::OntologyIO::obo::write_ontology().
> The current parser ignores a number of fields in common obo files.
> If anyone knows any issues regarding adding more information into  
> obo ontology
> object, shout now.
>
> I need to start parsing at least "xref_analog" and "subset" to get a
> reasonable roundtrip of obo files representing cell ontology and  
> sequence
> ontology.
>
> I am not aiming at extending the existing ontology interfaces but  
> simply
> patching obo parsing, but I am open to suggestions.
>
> 	-Heikki
>
> -- 
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>   _/  _/  _/  University of Western Cape, South Africa
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign