[Bioperl-l] get regions

[Thiago Venancio]

Hi all,

Using Bio::Seq, is there any easy way to get the coordinates where a
regular expression matches or should I build a sliding window?

For example, looking for a given promoter region in a FASTA file. If
the region is found, I would like to recover exactly the coordinates
where it matches.

Thanks in advance.

Thiago
-- 
"Doubt is not a pleasant condition, but certainty is absurd."
            Voltaire

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Thiago Motta Venancio, MSc
PhD student in Bioinformatics
University of Sao Paulo
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