[Bioperl-l] Help : Imagemaps using Bio::Graphics

[Scott Cain]

Perhaps if you provided some code and sample data we might be able to
help you better.

Scott


On Tue, 2007-05-01 at 21:34 +0530, Shameer Khadar wrote:
> Dear Scot,
> 
> > There is a fair amount of documentation in the perldoc for
> > Bio::Graphics::Panel under the section called 'Creating Imagemaps'; have
> > you read that?
> 
> I agreed, but I couldnt the exact information I needed :( (may be I missed
> something important).
> 
> >  Also, for changing the scale, that should happen
> > automatically--have you tried yet?
> 
> I tried by changing the Lincoln's program eg: blast3.pl
> my $full_length = Bio::SeqFeature::Generic->new(-start=>1,-end=>1000);
>  to my
> $full_length = Bio::SeqFeature::Generic->new(-start=>1,-end=>300);
> 
> But it had given me a smaller scale of length upto 300. I was looking for
> an option where I need same width and height of given image and a dynamic
> start and end values depending on length of my sequence. Since I couldnt
> accomplish, I thought of getting some help from you guys. I think I need
> to play a little bit with the value for reformat the scale to accomodate
> my hits as well.
> 
> Thanks a lot for your inputs,
-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   cain.cshl at gmail.com
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory

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