[Bioperl-l] generate a fasta file from the blast report
torsten.seemann at infotech.monash.edu.au
Tue May 1 00:22:35 UTC 2007
> if i have the following script working on my blast report, can anyone plz
> tell me how can i generate a fasta format file of just the hits (subject)
Do you want the WHOLE subject sequence, or just the region that hit the query?
The hit is available as $hsp->hit_string();
The whole subject sequence would require the original Fasta input file.
By the way, are your questions for work related issues, or is this
your homework or assignment for a study course?
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