[Bioperl-l] PAML/Codeml parsing

[Stefan Kirov]

Jason Stajich wrote:
> PAML4 breaks our PAML parser right now because the order of things in  
> the result file has changed.  Now sequences precede the information  
> about the version or the program run.  This means that $result- 
>  >get_seqs() fails because we don't parse the sequences.
>
> We'll see what we can do, but as usual with supporting 3rd party  
> programs it is brittle when file formats change.  Th
>
> -jason
>
> --
> Jason Stajich
> jason at bioperl.org
>
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>   
Jason,
I saw a commit after this post on codeml, but not on PAML.pm- I assume
this is not fixed, am I correct?
Thanks!
Stefan