[Bioperl-l] indexing whole genbank
Chris Fields
cjfields at uiuc.edu
Thu Nov 16 15:31:08 UTC 2006
> Hello,
>
> I wrote to this list before because I wasn´t able to index
> the whole of genebank. I´ve tried to do it spliting the work
> by creating small indexes and it has worked perfectly so that
> seems the way to do it.
>
> Thanks for your comments,
> Guillermo
Thanks for the update. I think that the problem was a full GenBank file is
way too large for flatfile indexing (I think it's around 800 GB unpacked
now). Nice to know doing it by divisions works.
chris
Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign
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