[Bioperl-l] Bio::SeqIO::scf header/comments handling

[Mauricio Herrera Cuadra]

The usual way is to send your modifications as an 'enhancement' through 
the Bugzilla system (please add your patches as attachments after 
creating the report, not into the description field):

http://bugzilla.open-bio.org/

Thanks for contributing!

Regards,
Mauricio.

Nancy Hansen wrote:
> On Tue, 31 Oct 2006, Brian Osborne wrote:
> 
>> It looks like a good place to start would be the get_header() and
>> _get_header methods in Bio::SeqIO::scf. If you read t/scf.t you can see that
>> the author, at some point, wanted get_header to return meaningful
>> information but stepping through the test shows it returning a lot of UNDEF.
>> Now I don't know if this is due to the method or the source SCF file, but
>> you might be able to get these methods to work yourself.
>>
>> But to answer your questions, yes, it certainly sounds reasonable that these
>> values would be extracted by Bio::SeqIO::scf.
> 
> Sounds great!  So, if I make these changes, is there someone I should run
> them by before checking them into CVS?  Is Chad Matsalla still involved in
> bioperl?  I've never contributed to the project, so I'm not sure how
> things work...
> 
> 	Thanks!
> 	--Nancy
> 
> *************************************
> Nancy F. Hansen, PhD	nhansen at nhgri.nih.gov
> Bioinformatics Group
> NIH Intramural Sequencing Center (NISC)
> 5625 Fishers Lane
> Rockville, MD 20852
> Phone: (301) 435-1560	Fax: (301) 435-6170
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-- 
MAURICIO HERRERA CUADRA
arareko at campus.iztacala.unam.mx
Laboratorio de Genética
Unidad de Morfofisiología y Función
Facultad de Estudios Superiores Iztacala, UNAM