[Bioperl-l] entrezgene.pm not in Bio::SeqIO

[Stefan Kirov]

You are using an old Bio::Annotation::DBLink module. Did you download 
only entrezgene.pm or the whole  bioperl? If yes, what does the tests 
tell you?
Stefan
 
Daily, Kenneth Michael wrote:

>OK, got that installed. But I still get an error:
>
>Can't locate object method "url" via package "Bio::Annotation::DBLink" at /home/kmdaily/src/bioperl/core/Bio/SeqIO/entrezgene.pm line 557.
>
>I am using this on a shared system, and an older version of Bioperl was installed by the admin. But the path to the one I downloaded via CVS is first in the list @INC, and PERL5LIB="/home/kmdaily/src/bioperl/core".
>
>Kenny Daily
>IU School of Informatics
>kmdaily at indiana.edu
>
>
>
>-----Original Message-----
>From: Christopher Fields [mailto:cjfields at uiuc.edu]
>Sent: Tue 5/16/2006 7:38 AM
>To: Daily, Kenneth Michael; bioperl-l at lists.open-bio.org
>Subject: Re: [Bioperl-l] entrezgene.pm not in Bio::SeqIO
> 
>You'll have to install from CVS.  I believe Brian added Entrezgene.pm after the lst 
>developer release  (1.5.1):
>
>http://www.bioperl.org/wiki/Installing_BioPerl
>
>Chris
>
>---- Original message ----
>  
>
>>Date: Mon, 15 May 2006 17:00:12 -0400
>>From: "Daily, Kenneth Michael" <kmdaily at indiana.edu>  
>>Subject: [Bioperl-l] entrezgene.pm not in Bio::SeqIO  
>>To: <bioperl-l at lists.open-bio.org>
>>
>>I just installed Bioperl 1.4, and entrezgene.pm is not included (should be in 
>>    
>>
>Bio/SeqIO). How can I get this module?
>  
>
>>Kenny Daily
>>IU School of Informatics
>>kmdaily at indiana.edu
>>
>>
>>_______________________________________________
>>Bioperl-l mailing list
>>Bioperl-l at lists.open-bio.org
>>http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>    
>>
>
>
>
>_______________________________________________
>Bioperl-l mailing list
>Bioperl-l at lists.open-bio.org
>http://lists.open-bio.org/mailman/listinfo/bioperl-l
>  
>