[Bioperl-l] Can't parse bacterial strain from EMBL OS or RC lines

[Brian Osborne]

Mark,

The RC line is part of the description of a reference, I'm guessing 'RC'
stands for Reference Comment. In order to get the attributes of a reference
you'll first do something like:

my $anno_collection = $seq->annotation;
my @references = $anno_collection->get_Annotations('reference');

To get the comment field for a specific reference you can do:

$references[0]->comment;

See the Feature-Annotation HOWTO for more information on Annotations, the
Reference object is a kind of Annotation object.

Brian O.


On 5/3/06 3:34 PM, "Mark A. Miller" <mamillerpa at yahoo.com> wrote:

> Yeah.  Do you have any experience with that?
> 
> Mark
> 
> --- Brian Osborne <osborne1 at optonline.net> wrote:
> 
>> Mark,
>> 
>> So you're trying to get the information in the RC line from a
>> Swissprot
>> format file?
>> 
>> Brian O.
> 
> 
> ---   ---   ---   ---   ---   ---   ---   ---
> 
> Mark A. Miller
> 
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