[Bioperl-l] Bio::SearchIO::hmmer hsp behaviour
Chris Fields
cjfields at uiuc.edu
Wed Jun 28 22:16:38 UTC 2006
Arghhhh! Made a mistake:
> my $result_count = 1;
> while ( my $result = $searchio->next_result() ) {
> print "Result $result_count : ",$result->query_name,"\n";
> print "Result models: ",$result->num_hits,"\n";
> while (my $model = $result->next_hit) {
> print "\tModel : ",$model->name,"\n";
> print "\tSignif: ",$model->significance,"\n";
> while (my $domain = $model->next_hsp) {
> print "\t\tDomain : ",$domain->name,"\n";
^^^^^^^
Should be: $model
> print "\t\tEvalue : ",$domain->evalue,"\n";
> }
> }
> $result_count++;
> }
My bad!
Chris
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