[Bioperl-l] Bio::AlignIO::metafasta tests
Sendu Bala
sb at mrc-dunn.cam.ac.uk
Tue Jun 6 09:17:48 UTC 2006
Chris Fields wrote:
> Heikki,
>
> I uncovered a weird bug concerning Bio::AlignIO::metafasta which popped up
> when running AlignIO.t (I was fixing bug 2000):
>
> http://bugzilla.open-bio.org/show_bug.cgi?id=2016
>
> Not sure what's going on there but using read_aln and write_aln seem to work
> normally. It may have something to do with Bio::SimpleAlign but I'm not
> absolutely sure.
>
> Any ideas what may be going on here?
Yes, see my replies on the bug page. But so more people see the
question, I'll ask here: can anyone offer examples of metafasta files,
especially multiple alignments?
More information about the Bioperl-l
mailing list