[Bioperl-l] PAML + Codeml problem

[Neil Saunders]

Not a solution to the original post, but I thought it worth pointing out that as 
IUPAC have now adopted "O" for amino acid 22, pyrrolysine, any alphabetical 
character is now valid in a protein sequence:

B=D/N, J=I/L, O=pyrrolysine, U=selenocysteine, X=unknown, Z=E/Q


Leaving aside issues like how other software deals with this and how databases 
deal with translated stop codons (or not), I just wondered if any BioPerl 
modules require changes to reflect this?


Neil
-- 
  School of Molecular and Microbial Sciences
  University of Queensland
  Brisbane 4072 Australia

http://nsaunders.wordpress.com