[Bioperl-l] 1.5.1 RC3 Tests

[Brian Osborne]

Paul,

Don't know about all of them but this one:

MSG: Bio::PrimarySeq=HASH(0x3061f1ec) is not a SeqI compliant sequence
object!

Is the expected result, the test is asking whether the object is
SeqI-compliant and expecting the answer to be false.

This one:

MSG: overwriting a current value stored for AJ288898

Has been around for a very long time, prior to 1.4 I believe.


Brian O.


On 9/29/05 10:48 AM, "paul.boutros at utoronto.ca" <paul.boutros at utoronto.ca>
wrote:

> On:
> AIX 5.2.0.0
> Perl 5.8.7
> 
> =====================================
> All tests successful, 32 subtests skipped.
> Files=221, Tests=9936, 325 wallclock secs (125.00 cusr + 21.72 csys = 146.72
> CPU)
> =====================================
> 
> I do get a few warnings -- not sure if some of these are caused by the 1.4.0
> that's already installed?  Let me know if any of these shouldn't be there and
> I 
> can track them down....
> Paul
> 
> ==========================================================================
> t/embl.......................ok 13/44
> -------------------- WARNING ---------------------
> MSG: Bio::PrimarySeq=HASH(0x3061f1ec) is not a SeqI compliant sequence object!
> ---------------------------------------------------
> 
> -------------------- WARNING ---------------------
> MSG: test is not a SeqI compliant sequence object!
> ---------------------------------------------------
> t/FeatureIO..................ok 2/22
> -------------------- WARNING ---------------------
> MSG: '##feature-ontology' directive handling not yet implemented
> ---------------------------------------------------
> 
> -------------------- WARNING ---------------------
> MSG: '##attribute-ontology' directive handling not yet implemented
> ---------------------------------------------------
> 
> -------------------- WARNING ---------------------
> MSG: '##source-ontology' directive handling not yet implemented
> ---------------------------------------------------
> t/Index......................ok 15/47
> -------------------- WARNING ---------------------
> MSG: overwriting a current value stored for AJ288898
> 
> ---------------------------------------------------
> 
> -------------------- WARNING ---------------------
> MSG: overwriting a current value stored for AI129902
> 
> ---------------------------------------------------
> 
> -------------------- WARNING ---------------------
> MSG: overwriting a current value stored for BAB68554
> 
> ---------------------------------------------------
> t/simpleGOparser.............ok 1/101
> -------------------- WARNING ---------------------
> MSG: MPATH:38 exists in the dblink of _default
> ---------------------------------------------------
> 
> -------------------- WARNING ---------------------
> MSG: MPATH:41 exists in the dblink of _default
> ---------------------------------------------------
> All tests successful, 32 subtests skipped.
> Files=221, Tests=9936, 325 wallclock secs (125.00 cusr + 21.72 csys = 146.72
> CPU)
> ==========================================================================
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