[Bioperl-l] bioperl-run 1.5.1 RC1 up

[George Hartzell]

Jason Stajich writes:
 > okay - I made some fixes,
 > go ahead and try RC2 instead.
 > 
 > [...]
 > t/Primer3.t                 7    1  14.29%  7
 > [...]
 > can someone at least look at the Phrap and Primer3 stuff.

You can fix the Primer3.t test by changing the expected value from a 4
to a 5.  There was a bug in Bio::Tools::Primer3.pm involving counting
the results that's been patched, it seems that the test code in
Primer3.t didn't keep up:

*** t/Primer3.t.orig    Mon Sep 26 21:09:46 2005
--- t/Primer3.t Mon Sep 26 21:09:56 2005
***************
*** 49,51 ****
  ok $primer3->add_targets('PRIMER_SEQUENCE_ID'=>'test seq');
  ok $results = $primer3->run;
! ok( $num_results = $results->number_of_results,4);
--- 49,51 ----
  ok $primer3->add_targets('PRIMER_SEQUENCE_ID'=>'test seq');
  ok $results = $primer3->run;
! ok( $num_results = $results->number_of_results,5);

I have two other patches to my version of Primer3.pm and am trying to
remember what they fix....  I'll send them along if they're still
needed.

g.