[Bioperl-l] About the location of the microRNAs

[Sean Davis]

On 9/21/05 4:40 PM, "Alex Zhang" <mayagao1999 at yahoo.com> wrote:

> Hello! This is Alex.
> My current ongoing research project is about the discovery of the expression
> of all
> human microRNAs. 
> 
> In particular, I need to gain the information about the location of each Homo
> sapiens
> microRNA on the chromosomes. For example, I need the information like:
> 
> Id                   Chromosome       Start     End
> hsa-mir-200b           1             1142407   1142501
> hsa-mir-200a           1             1143166   1143255
> hsa-mir-429             1             1144308   1144390
> hsa-mir-34a             1             9145993   9146102
> hsa-mir-30e             1             40889120  40889211
> .......
> 
> Is there a convenient way to get this automatically instead of manually?

Go to the UCSC table browser and just grab the miRNA (hg16) or sno/miRNA
(hg17) table.  The link is here:

http://genome.ucsc.edu/cgi-bin/hgTables

Alternatively, you can download the mysql table from them, as well.

Sean