[Bioperl-l] query

Barry Moore bmoore at genetics.utah.edu
Wed Sep 14 20:53:00 EDT 2005


Neeti,

I think that if you set the sequence format to fasta, it will pull
together the joins and give you the sequence you're after.  Maybe
someone can correct me on that if I'm wrong.  I haven't done that, I
think I remember reading something like that though.

Barry

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of Neeti
Somaiya
Sent: Monday, September 12, 2005 5:56 AM
To: bioperl-l at portal.open-bio.org
Subject: [Bioperl-l] query

Barry,

I went through your code for parsing of GenBank files.It works perfectly

fine,but for GenBank files of contigs,as in,sequences with NT 
accessions.Could you help me in this regard.

Thanks,
Neeti.
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