[Bioperl-l] Fwd: Program

[Heikki Lehvaslaiho]

Manish,

BioPerl has modules for parsing BLAST output. Install BioPerl and read the 
SearchIO HOWTO to get started (http://bioperl.org/HOWTOs/html/SearchIO.html).


	-Heikki

On Tuesday 22 November 2005 16:31, Jason Stajich wrote:
> Manish -
>
> Please address your query to the Bioperl mailing list.
>
> -jason
>
> Begin forwarded message:
> > From: Manish Kumar <unforgetable_manish at yahoo.com>
> > Date: November 22, 2005 7:07:54 AM EST
> > To: jason at bioperl.org
> > Subject: Program
> >
> > Hello,
> >            I am Manish Kumar n I m M.Sc
> > (Bioinfomatics) student n i need the perl program for
> > BLAST. I mean what is the program for BLAST that it
> > gives this type of results.
> >
> >
> > For example:-
> > Score = 40.1 bits (20),  Expect = 0.16
> > Identities = 23/24 (95%), Gaps = 0/24 (0%)
> > Strand=Plus/Minus
> >
> > Query  1     ATGTGTACGTGCGTGGTTACGTGC  24
> >
> > Sbjct  8466  ATGTGTACGTGTGTGGTTACGTGC  8443
> >
> > The above is an example of the BLAST output. Now i
> > need the program for this output.
> > thanking you
> > Best Regards
> > Manish
> >
> >
> >
> >
> >
> >
> > __________________________________
> > Start your day with Yahoo! - Make it your home page!
> > http://www.yahoo.com/r/hs
>
> --
> Jason Stajich
> jason at bioperl.org
> http://jason.open-bio.org/
>
>
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-- 
______ _/      _/_____________________________________________________
      _/      _/
     _/  _/  _/  Heikki Lehvaslaiho    heikki at_sanbi _ac _za
    _/_/_/_/_/  Associate Professor    skype: heikki_lehvaslaiho
   _/  _/  _/  SANBI, South African National Bioinformatics Institute
  _/  _/  _/  University of the Western Cape, South Africa
     _/      Phone: +27 21 959 2096   FAX: +27 21 959 2512
___ _/_/_/_/_/________________________________________________________