[Bioperl-l] Problem with bioperl installation

[Jason Stajich]

Doesn't sound like anything was installed.  What are the errors  
during installation?

Did you try the RPM approach? http://apt.bea.ki.se/

-jason
On Nov 17, 2005, at 3:43 PM, John Slimick wrote:

>
> Help!
>
> I have tried to install Bioperl for use in
> one of my classes, but I have found a roadblock.
> I have installed current Bioperl by using
> the CPAN route and also using the "make"
> approach. This is on a RH 9.0 system.
> I get the same error on either installation.
>
> Here is the file I wished to test (from the Bioperl
> document):
>
> =======================================================
> #!/usr/bin/perl -w
> use strict;
>
> use Bio::Perl;
>
> $seq_object = get_sequence('swiss',"ROA_HUMAN");
>
> write_sequence(">roa1.fasta",'fasta',$seq_object);
> ==========================================================
>
> I get the following message:
>
>    Can't locate Bio/Perl.pm in @INC( @INC contains ,,long file list)
>
> When I do:
>
>    $ find / -name Perl.pm -print
>
> as _root_ all I get is a single hit
> of
>
>    .../READLINE/Perl.pm
>
> Any thoughts?
>
> Thanks in advance.
>
> john slimick
> slimick at pitt.edu
>
>
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--
Jason Stajich
Duke University
http://www.duke.edu/~jes12