[Bioperl-l] bioperl-db and MySQL

[Hilmar Lapp]

You run 'make test' to see if it works. Installation itself can't 
really get much wrong.

You need to follow the instructions for t/DBHarness.conf.example before 
you can successfully run 'make test'.

	-hilmar

On Nov 16, 2005, at 3:53 PM, chen li wrote:

> I unzipped the download files and used "nmake install"
> to install bioperl-db on my computer. And it seems it
> works because I see many files/pm are copied to the
> defautl library(c:/Perl/site/lib/Bio/DB...." on my
> computer). Now my question: How do I know if it is
> installed correctly and will be working? Can I issue a
> command like "perldoc ???" to check if it is in the
> documantation?
>
> Thanks,
>
> Li
>
> --- Hilmar Lapp <hlapp at gmx.net> wrote:
>
>> Bioperl-db needs to be in your @INC (perl's path for
>> loading perl
>> modules) at runtime - so it doesn't matter where you
>> put it so long as
>> you have the location in the PERL5LIB environment
>> variable before
>> executing a script, or include the location at the
>> top of the script
>> via 'use lib c:\path\to\bioperl-db;'. Supposedly,
>> simply installing
>> bioperl-db should take care of the problem too.
>>
>> 	-hilmar
>>
>> On Nov 5, 2005, at 5:20 PM, chen li wrote:
>>
>>> Hello everyone,
>>>
>>> I want to install bioperl-db on my windows XP with
>>> ActivePerl.  I read the HOWTOs about installing(
>>>
>>
> http://cvs.biomoby.org/cgi-bin/viewcvs/viewcvs.cgi/bioperl-db/docs/
>>
>>> HOWTO-MySQL.html).
>>> But I failed to do the nmake test. Then I read the
>>> HOWTOs again, which points out that install will
>> fail
>>> if the DBD:: and DBI::Mysql modules cannot be
>> found.
>>>
>>> On my PC MySQL, Perl, and Bioperl-db are kept in
>>> different directory. I use PPM to install
>> DBD::Mysql
>>> and DBI::Mysql. I install MySQL using binary code.
>> My
>>> question: Where should I keep the Bioperl-db
>> including
>>> bioperl-schema so that installation will succeed?
>>>
>>> Thanks,
>>>
>>> Li
>>>
>>>
>>>
>>>
>>> 	
>>> 		
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>>>
>>
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>>>
>>>
>> -- 
>>
> -------------------------------------------------------------
>> Hilmar Lapp                            email: lapp
>> at gnf.org
>> GNF, San Diego, Ca. 92121              phone:
>> +1-858-812-1757
>>
> -------------------------------------------------------------
>>
>>
>>
>
>
>
> 		
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-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------