[Bioperl-l] Bio::Tools::RepeatMasker typo?

[Jason Stajich]

Nice - thanks for seeing/reporting that.  Fixed in CVS now. No reason  
that this can't just be two new calls though, I'm condensing the code  
a little.

My commit diff is here:
http://portal.open-bio.org/pipermail/bioperl-guts-l/2005-November/ 
020113.html
-

jason
On Nov 2, 2005, at 12:16 PM, Emmanuel Quevillon wrote:

> Hi,
>
> I just played with RepeatMasker module to parse output and create  
> GFF3.
> I noticed there is (I am not sure if it is a typo or it is wanted)  
> mistyped line in
> function next_result() :
>
>          my $rf = Bio::SeqFeature::Generic->new;
>          $rf->seq_id          ($query_name);
>          $rf->score            ($score);
>          $rf->start            ($query_start);
>          $rf->end              ($query_end);
>          $rf->strand           ($strand);
>          $rf->source_tag       ("RepeatMasker");
>          $rf->primary_tag      ($repeat_class);
>          my $rf2 = Bio::SeqFeature::Generic->new;
>          $rf2->seq_id         ($repeat_name);
>          $rf2->score           ($score);
>          $rf2->start           ($hit_start);
>          $rf2->end             ($hit_end);
>          $rf2->strand          ($strand);
>          $rf2->source_tag      ("RepeatMasker");             $rf- 
> >primary_tag      ($repeat_class);    <=========== Would not be  
> $rf2 instead?
>
> Please let me know.
>
> Thanks
>
> Regards
>
> Emmanuel
>
>
>
> <equevill.vcf>
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--
Jason Stajich
Duke University
http://www.duke.edu/~jes12