[Bioperl-l] Re: [GMOD-devel] RPMs for Bioperl and GMOD

[Lincoln Stein]

Hi Allen,

Don't release a gbrowse RPM if it is even slightly broken.

Lincoln

On Thursday 27 January 2005 11:48 pm, Allen Day wrote:
> SUMMARY:
> ========
>
> I've successfully built RPMs for the GBrowse, Bioperl, and
> Bioperl-DB dependency trees.  These are for CVS HEAD, not the most
> recent releases. I've only tested on Fedora Core 2 and RedHat 9. 
> Fedora Core 2 packages are available here:
>
> http://sumo.genetics.ucla.edu/~allenday/flute-fc2/i386/
> http://sumo.genetics.ucla.edu/~allenday/flute-fc2/noarch/
>
> The source RPMs are available as well
>
> http://sumo.genetics.ucla.edu/~allenday/flute-fc2/SRPMS
>
> A few notes on what non-obvious steps needed to be taken to make
> this work:
>
>   * pruned Bioperl-DB to remove Oracle dependencies
>   * pruned Gbrowse to remove AcePerl dependencies
>   * pruned Bioperl to remove AcePerl dependencies
>   * pruned SOAP::Lite to remove MQSeries dependencies
>   * pruned Gbrowse to remove Mac OS X dependencies
>   * pruned a few modules (Net::DNS, Mail::Sender, etc) to remove
>     Win32::* dependencies.
>   * piggybacked on existing RPMs for rrdtool, Template Toolkit,
>     Module-Build, and CPANPLUS.  Thanks to Dag Wieeers [1] for
> these.
>
>
>
> TODO:
> =====
>
> The Bioperl install is fully functional as far as I can tell.
>
> I'd appreciate it if someone with Oracle and DBD::Oracle installed
> could give Bioperl-DB a spin and verify that it works.
>
> I'd also like someone with Oracle to help me make a DBD::Oracle
> rpm. Having a DBD::Oracle RPM will allow me to leave the Oracle
> code in Bioperl-DB.
>
> The Gbrowse install is slightly broken, but this is mainly due to a
> major rewrite that's taking place right now.  I'll make another
> announcement to the GMOD list when the Gbrowse RPM works out of the
> box.
>
> -Allen
>
> [1] http://dag.wieers.com
>
>
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-- 
Lincoln D. Stein
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724

NOTE: Please copy Sandra Michelsen <michelse at cshl.edu> on
all emails regarding scheduling and other time-critical topics.
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