[Bioperl-l] RPMs for bioperl

[Allen Day]

Hi,

I've put together a set of RPMs for Bioperl, Bioperl-DB, Bioperl-Run, and
GBrowse.  It's still a work in progress, but you can see the current state
here:
  http://sumo.genetics.ucla.edu/~allenday/flute/bioperl-1.5/i686/
There are some related directories rooted here: 
  http://sumo.genetics.ucla.edu/~allenday/flute/

The RPMs don't install clean.  This is because I'm using an automated tool
to build the RPMs, and it looks through each downloaded tarball from CPAN
to see what that tarball depends on.  Sometimes there are dependencies on
libraries that don't exist on CPAN, or might be altogether non-existent.  
These are the problem libraries and binaries:

% rpm -Uvh --test *.rpm
error: Failed dependencies:
        perl(Ace::Browser::LocalSiteDefs) is needed by perl-AcePerl-1.87-allenday
        perl(Bio::Das::ProServer::SourceHydra) is needed by perl-Bio-Das-0.99-allenday
        perl(IndexSupport) is needed by perl-Bio-Das-0.99-allenday
        perl(srsperl) is needed by perl-bioperl-1.5.0-allenday
        perl(Bio::DB::BioDB) is needed by perl-Generic-Genome-Browser-1.62-allenday
        perl(Bio::DB::Query::BioQuery) is needed by perl-Generic-Genome-Browser-1.62-allenday
        perl(GuessDirectories) is needed by perl-Generic-Genome-Browser-1.62-allenday
        perl(MOBY::Client::Central) is needed by perl-Generic-Genome-Browser-1.62-allenday
        perl(MOBY::Client::Service) is needed by perl-Generic-Genome-Browser-1.62-allenday
        perl(MOBY::CommonSubs) is needed by perl-Generic-Genome-Browser-1.62-allenday
        perl(MOBY::MobyXMLConstants) is needed by perl-Generic-Genome-Browser-1.62-allenday
        perl(PPM::Archive) is needed by perl-Generic-Genome-Browser-1.62-allenday
        perl(MQClient::MQSeries) is needed by perl-SOAP-Lite-0.60-allenday
        perl(MQSeries) is needed by perl-SOAP-Lite-0.60-allenday
        perl(MQSeries::Message) is needed by perl-SOAP-Lite-0.60-allenday
        perl(MQSeries::Queue) is needed by perl-SOAP-Lite-0.60-allenday
        perl(MQSeries::QueueManager) is needed by perl-SOAP-Lite-0.60-allenday
        /bin/perl is needed by perl-Tk-804.027-allenday
        /usr/local/bin/perl is needed by perl-Tk-804.027-allenday
        perl(Tk::LabRadio) is needed by perl-Tk-804.027-allenday
        perl(Tk::TextReindex) is needed by perl-Tk-804.027-allenday
        perl(XML::LibXML) >= 1.57 is needed by perl-XML-LibXSLT-1.57-allenday
        perl(XML::SAX::PurePerl::DTDDecls) is needed by perl-XML-SAX-0.12-allenday
        perl(XML::SAX::PurePerl::DocType) is needed by perl-XML-SAX-0.12-allenday
        perl(XML::SAX::PurePerl::EncodingDetect) is needed by perl-XML-SAX-0.12-allenday
        perl(XML::SAX::PurePerl::XMLDecl) is needed by perl-XML-SAX-0.12-allenday

Lincoln, I'm guessing you can help me with:

* Ace::Browser::LocalSiteDefs
* Bio::Das::ProServer::SourceHydra
* GuessDirectories
* IndexSupport
* MOBY::*

Hilmar, do you know about:

* Bio::DB::BioDB
* Bio::DB::Query::BioQuery

I'm sure someone on this list knows where to get

* srsperl
* PPM::Archive

If anyone can shed light on where any of these libraries can be found, I'd
appreciate it.  Thanks.

-Allen