[Bioperl-l] gff -> match/hsp in gbrowse

[Lincoln Stein]

You can continue to work in gff2, even when using bioperl 1.5.  
Alternatively the GFF3 version of HSP alignments is a simple matter 
of replacing the target coordinates with the Target=XXXXXXX attribute 
using the format described in the GFF3 spec.

Lincoln

On Friday 21 January 2005 10:45 am, Raoul Jean Pierre Bonnal wrote:
> Dear Community,
> today I have upgraded my bioperl installation to 1.5.0-rc2.
> How can I configure my gbrose db.conf to display match/hsp from
> myfile.gff ( default bioperl 1.5.0-rc2 format ) ?
> Gbrowse's tutorial describe the configuration of the previous
> format and it doesn't work for gff3.
>
> Is it possible to filter hsp for every match by rank or score from
> gbrowser db.conf file ? Can you post a working example, plez?
>
>
> tnx in advance.
>
> by RJP
>
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-- 
Lincoln D. Stein
Cold Spring Harbor Laboratory
1 Bungtown Road
Cold Spring Harbor, NY 11724

NOTE: Please copy Sandra Michelsen <michelse at cshl.edu> on
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