[Bioperl-l] Sequence features - complete sequences

[Paulo Almeida]

Hi,

I want to retrieve only complete sequences from GenPept records. I'm not
sure this is possible, because the notation may not be consistent, but I
was thinking of checking the 'Protein' feature for something like
<1..>952 (protein here:
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=34223805), which says there is more sequence upstream. I have
been looking at BioPerl feature objects but I couldn't find a way of
doing this. What module would need to be changed, or what code could be
written (maybe using the 'tag' feature of SeqFeature::Generic.pm? But then there would have to be some code attached to the tag, to parse the required information.) to accomplish
this?

Thank you,
Paulo

-- 
Paulo Almeida
Instituto Gulbenkian de Ciencia
Apartado 14, 2781-901, Oeiras, PORTUGAL
tel  +351 21 446 46 35
fax  +351 21 440 79 70
http://www.igc.gulbenkian.pt