[Bioperl-l] Feature table comparison

[Cook, Malcolm]

You might find gffintersect.pl from
http://www.sanger.ac.uk/Software/formats/GFF/ relevant when it is
described to:

	gffintersect.pl - efficiently finds the intersection (or
exclusion) of two GFF streams, reporting intersection information in the
Group field. Definition of "intersection" allows for near-neighbours and
minimum-overlap


--Malcolm Cook


>-----Original Message-----
>From: bioperl-l-bounces at portal.open-bio.org 
>[mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of 
>Robert Minshall
>Sent: Monday, January 17, 2005 7:40 AM
>To: bioperl-l at bioperl.org
>Subject: [Bioperl-l] Feature table comparison
>
>
>
>Hi does any one know of or have a script that can compare the 
>faeture tables of
>genomes and show what appears on one and not the other. ie i 
>want to find the
>differenmces on the feature tables. is this possible i'm new 
>to perl and was
>hoping that someone could point me in the right direction. my email is
>r.j.minshall at pgr.salford.ac.uk
>thanks in advance
>Rob Minshall
>
>--
>Robert J Minshall
>Postgraduate Researcher in Microbiology,
>Biosciences Research Institute,
>School of Environment and Life Sciences,
>Lab 209 Cockcroft Building,
>University of Salford,
>Salford,
>Greater Manchester.
>M5 4WT
>UK
>0161 2952652
>r.j.mishall at pgr.salford.ac.uk
>
>
>
>
>
>
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