[Bioperl-l] bioperl-1.5.0 RC2

[Steve Chervitz]

I just committed a small fix to Bio::DB::NCBIHelper, to deal with
downloading gbwithparts records.

It now allows you to deal with some genbank nucleotide records that by
default don't contain all CDS features, such as L42023.

To force the Bio::DB object to get all the features, you can do the
following:

my $gb = new Bio::DB::GenBank;
$gb->request_format('gbwithparts');

Not sure if this is the best approach, but it seems reasonable.

Steve

> From: Jason Stajich <jason.stajich at duke.edu>
> Date: Wed, 12 Jan 2005 15:14:17 -0500
> To: Bioperl list <bioperl-l at portal.open-bio.org>
> Subject: [Bioperl-l] bioperl-1.5.0 RC2
> 
> In preparation for Bioperl 1.5.0 developer release I have put up
> Release Candidate 2.
> 
>   http://bioperl.org/DIST/bioperl-1.5.0-RC2.tar.gz
>   http://bioperl.org/DIST/bioperl-1.5.0-RC2.tar.bz2
>   http://bioperl.org/DIST/bioperl-1.5.0-RC2.zip
> 
> 
> We need people to test on this.  So download, run
>   perl Makefile.PL
>   make
>   make test
> 
> Let us know what breaks.  I've tested on OS X and few different linux
> installs with different auxiliary modules installed.  Would be nice to
> have a few more combinations of OS, perl versions, and suite of modules
> installed before we make a release.
> 
> Thanks for your help.
> -jason
> --
> Jason Stajich
> jason.stajich at duke.edu
> http://www.duke.edu/~jes12/
> 
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