[Bioperl-l] bioperl-1.5.0 RC2

[Allen Day]

.....
t/Ontology...................set_attribute: not a compat02 graph at 
/net/groove/lib/perl5/site_perl/5.8.0/Graph.pm line 2253, <GEN0> line 10.
t/Ontology...................dubious                                         
        Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-50
        Failed 50/50 tests, 0.00% okay
t/OntologyEngine.............ok                                              
t/OntologyStore..............FAILED tests 3-6                                
        Failed 4/6 tests, 33.33% okay
.....
t/simpleGOparser.............set_attribute: not a compat02 graph at 
/net/groove/lib/perl5/site_perl/5.8.0/Graph.pm line 2253, <GEN1> line 14.
t/simpleGOparser.............dubious                                         
        Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-101
        Failed 101/101 tests, 0.00% okay
.....
Failed Test        Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t/Ontology.t        255 65280    50  100 200.00%  1-50
t/OntologyStore.t                 6    4  66.67%  3-6
t/simpleGOparser.t  255 65280   101  202 200.00%  1-101
114 subtests skipped.
Failed 3/193 test scripts, 98.45% okay. 155/8964 subtests failed, 98.27% 
okay.
make: *** [test_dynamic] Error 29

~~~~~

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~~~~

Looks like this is caused by Graph.pm.  I've seen other reports about "not
a compat02 graph" recently, maybe there is a Graph.pm versioning problem?

-Allen


On Wed, 12 Jan 2005, Jason Stajich wrote:

> In preparation for Bioperl 1.5.0 developer release I have put up 
> Release Candidate 2.
> 
>   http://bioperl.org/DIST/bioperl-1.5.0-RC2.tar.gz
>   http://bioperl.org/DIST/bioperl-1.5.0-RC2.tar.bz2
>   http://bioperl.org/DIST/bioperl-1.5.0-RC2.zip
> 
> 
> We need people to test on this.  So download, run
>   perl Makefile.PL
>   make
>   make test
> 
> Let us know what breaks.  I've tested on OS X and few different linux 
> installs with different auxiliary modules installed.  Would be nice to 
> have a few more combinations of OS, perl versions, and suite of modules 
> installed before we make a release.
> 
> Thanks for your help.
> -jason
> --
> Jason Stajich
> jason.stajich at duke.edu
> http://www.duke.edu/~jes12/
> 
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