[Bioperl-l] format checking

[Brian Osborne]

Guido,

The answer is sometimes yes, sometimes no, Bioperl doesn't appear to be
consistent. This is Bug 1508:

http://bugzilla.bioperl.org/show_bug.cgi?id=1508


Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Guido
Dieterich
Sent: Tuesday, January 04, 2005 9:45 AM
To: Bioperl List
Subject: [Bioperl-l] format checking


Hi bioperlaner,


            <code>$seqIO = Bio::SeqIO->new(-fh   => \*FH,
        -format=>'fasta');</code>
        I tried this
        as a fasta file

        gene_name>
        PPPPGGGAAAAA # any Sequence

        this does not create an error

        does the  Bio::SeqIO checks if a file or filehandle is in the
        appr opiate format,eg. a fasta format?
        It seems that not, or?

        Guido

--


Dr. Guido Dieterich
Dipl.-Biologe

BioComputing
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Es ist nicht genug, zu wissen, man muss auch anwenden.
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