[Bioperl-l] parse long organism name

[Qunfeng]

I didn't get any error msg.

When I parse the organism name with the following methods:

my $organism = $seq_object->species->binomial();
my $species = $seq_object->species->species();
my $genus = $seq_object->species->genus();
my $common_name = $seq_object->species->common_name();

I got the following value

$organism as Paphiopedilum 'Dark
$species as   Paphiopedilum
$genus as 'Dark
$common_name as  Paphiopedilum 'Dark Roller' x Paphiopedilum 
rothschildianum

So, the common_name is correct, while binmial(), species(), and genus() all 
assume that the name is in CORRECT species, genus form.

Qunfeng

At 10:14 AM 12/17/2004, Hilmar Lapp wrote:
>What's the error that you get, if any?
>
>         -hilmar
>
>On Thursday, December 16, 2004, at 03:00  PM, Qunfeng wrote:
>
>>For example,
>>http://www.ncbi.nlm.nih.gov/entrez/ viewer.fcgi?db=nucleotide&val=47776109
>>
>>It has a LONG name:
>><http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/ 
>>wwwtax.cgi?id=232838>Paphiopedilum 'Dark Roller' x Paphiopedilum
>>rothschildianum
>>
>>Is there anyway in Bioperl to parse out that long name from GenBank
>>format file?
>>
>>Thanks!
>>
>>Qunfeng _______________________________________________
>>Bioperl-l mailing list
>>Bioperl-l at portal.open-bio.org
>>http://portal.open-bio.org/mailman/listinfo/bioperl-l
>--
>-------------------------------------------------------------