[Bioperl-l] [OT] ISO guide to human genomics DBs
kynn at panix.com
kynn at panix.com
Mon Aug 22 15:30:10 EDT 2005
Hi! Does anyone know of a high-level guide to the various Human
genomics databases? Basically, I want to make my software as flexible
as possible regarding the kinds of human gene identifiers it will
recognize, but I'm having a hard time figuring out the various naming
schemes. I'm (vaguely) aware of
Entrez
IPI
Ensembl
SwissProt/UniProt
RefSeq
LocusLink
"gene symbols" (e.g. GHC1_HUMAN)
"gi numbers"
though I'm not sure these are strictly comparable. (Am I missing any
major ones?)
>From what I've seen at sites like http://harvester.embl.de it looks
like a huge mess, but maybe this is only a reflection of my ignorance.
Any pointers would be much appreciated!
kj
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