[Bioperl-l] Multiline Query Name in Blast Output

[Waibhav Tembe]

Hello List,

Is there any way to read multi-line query name from BLAST output using 
SearchIO?

E.g., for the first few lines of BLAST output (attached at the end) the 
code :

 while($result = $in->next_result ) {
     print $result->query_name, "\n";
}

prints only :
Cand_Start_41225:End_41249:Length_25:Extended_Length_75:Start_4

How to print the entire name that is in multiple lines? i.e.,
Cand_Start_41225:End_41249:Length_25:Extended_Length_75:Start_41200:End_41274_Section1To75_Start:12_Length:36

Thanks.

------------------------

BLASTN 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cand_Start_41225:End_41249:Length_25:Extended_Length_75:Start_4
1200:End_41274_Section1To75_Start:12_Length:36
         (36 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
           2,718,617 sequences; 12,254,801,043 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) 
Value

gi|21956769|gb|AE013611.1| Yersinia pestis KIM section 11 of 415...    
59   1e-07
gi|45434720|gb|AE017127.1| Yersinia pestis biovar Medievalis str...    
59   1e-07
gi|15978115|emb|AJ414141.1| Yersinia pestis strain CO92 complete...    
59   1e-07