[Bioperl-l] calculating the Ka/Ks ratio

[Csaba Ortutay]

> Is there a module that will take a pair of aligned (coding) sequences, and
> report the Ka/Ks ratio? (non-synonymous mutations per non-synonymous site /
> synonymous mutations per synonymous site).

See the Bio::Align::DNAStatistics module.

That's working nicely.

 Csaba

-- 
Csaba Ortutay PhD
Institute of Medical Technology
University of Tampere
e-mail: csaba.ortutay at uta.fi