[Bioperl-l] different label colours

Horvath Tamas hota.fin at freemail.hu
Fri Apr 29 10:33:17 EDT 2005 

Crabtree, Jonathan wrote:

>Hi Hota-
>
>This should work.  Why don't you try inserting the following line in
>your anonymous sub (after "my $feature = shift;") and then tell us what
>(if anything) shows up on STDERR when you run your script:
>
>print STDERR "tag='", $feature->primary_tag, "'\n";
>
>Jonathan
>
>  
>
>>-----Original Message-----
>>From: bioperl-l-bounces at portal.open-bio.org 
>>[mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of 
>>Horvath Tamas
>>Sent: Thursday, April 28, 2005 8:25 AM
>>To: Bioperl
>>Subject: [Bioperl-l] different label colours
>>
>>
>>I'm trying to use different label colours in one single 
>>track, but the  
>>'sub {}' does not work for the '-fontcolor' option. Is there 
>>a solution? 
>>If not yet, where should I look over the code, to implement it?
>>
>>Hota
>>
>>PS.:
>>
>>-fontcolor => sub { my $feature = shift;
>>                                         return 'red' if 
>>$feature->primary_tag =~ /mudr/i;
>>                                         return 'blue' if 
>>$feature->primary_tag =~ /zn_finger/i;
>>                                         return 'orange' if 
>>$feature->primary_tag =~ /repeat/i;
>>                                         return 'green' if 
>>$feature->primary_tag eq 'exon';
>>                                    },
>>this is how it looks like, but the label color is consistently black 
>>(though if I explicitly use -fontcolor => 'green' then the label is 
>>green indeed)
>>_______________________________________________
>>Bioperl-l mailing list
>>Bioperl-l at portal.open-bio.org 
>>http://portal.open-> bio.org/mailman/listinfo/bioperl-l
>>
>>    
>>
>
>_______________________________________________
>Bioperl-l mailing list
>Bioperl-l at portal.open-bio.org
>http://portal.open-bio.org/mailman/listinfo/bioperl-l
>
>
>  
>
Sorry, it's pretty messed up, but anyway, it looks like: (at font color, 
it is always '')

tag_at_glyph='mudr_exon'
tag_at_glyph='mudr_exon'
tag_at_glyph=''
tag_at_glyph='zn_finger_exon'
tag_at_glyph='zn_finger_exon'tag_at_connector='
'
tag_at_connector=''
tag_at_connector='repeat_L'
tag_at_strand_arrow='repeat_L'
tag_at_bgcolor='repeat_L'
tag_at_connector='repeat_R'
tag_at_strand_arrow='repeat_R'
tag_at_bgcolor='repeat_R'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='last_exon'
tag_at_strand_arrow='last_exon'
tag_at_bgcolor='last_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='repeat_L'
tag_at_strand_arrow='repeat_L'
tag_at_bgcolor='repeat_L'
tag_at_connector='repeat_R'
tag_at_strand_arrow='repeat_R'
tag_at_bgcolor='repeat_R'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='last_exon'
tag_at_strand_arrow='last_exon'
tag_at_bgcolor='last_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='repeat_L'
tag_at_strand_arrow='repeat_L'
tag_at_bgcolor='repeat_L'
tag_at_connector='repeat_R'
tag_at_strand_arrow='repeat_R'
tag_at_bgcolor='repeat_R'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='last_exon'
tag_at_strand_arrow='last_exon'
tag_at_bgcolor='last_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='repeat_L'
tag_at_strand_arrow='repeat_L'
tag_at_bgcolor='repeat_L'
tag_at_connector='repeat_R'
tag_at_strand_arrow='repeat_R'
tag_at_bgcolor='repeat_R'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='last_exon'
tag_at_strand_arrow='last_exon'
tag_at_bgcolor='last_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='repeat_L'
tag_at_strand_arrow='repeat_L'
tag_at_bgcolor='repeat_L'
tag_at_connector='repeat_R'
tag_at_strand_arrow='repeat_R'
tag_at_bgcolor='repeat_R'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='last_exon'
tag_at_strand_arrow='last_exon'
tag_at_bgcolor='last_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='repeat_L'
tag_at_strand_arrow='repeat_L'
tag_at_bgcolor='repeat_L'
tag_at_connector='repeat_R'
tag_at_strand_arrow='repeat_R'
tag_at_bgcolor='repeat_R'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector=''
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='exon'
tag_at_strand_arrow='exon'
tag_at_bgcolor='exon'
tag_at_connector='last_exon'
tag_at_strand_arrow='last_exon'
tag_at_bgcolor='last_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_connector='mudr_exon'
tag_at_strand_arrow='mudr_exon'
tag_at_bgcolor='mudr_exon'
tag_at_fontcolor=''
tag_at_connector=''
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_connector='zn_finger_exon'
tag_at_strand_arrow='zn_finger_exon'
tag_at_bgcolor='zn_finger_exon'
tag_at_fontcolor=''

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