[Bioperl-l] SearchIO::Writer::GbrowseGFF

[Susan J. Miller]

Jason Stajich wrote:
> You should be able to just call:
> my $cigarstring = $hsp->cigar_string.
> 
> it takes care of delegating to generate_cigar_string for you.

Thank you, Jason - that's exactly what I need.

I have another (semi-related) question:  why doesn't SearchIO 
write_result output the cigar string when the output_format is 'GbrowseGFF'?


Thanks,

Susan J. Miller
Biotechnology Computing Facility
University of Arizona