[Bioperl-l] RE: Problem running clustalw.pl for the first time.

[Lisa]

Hello,

 I am new to BioPerl and have had the modules installed by our system 
admin (They appear to be installed correctly)
and I have complied the clustalw and it works from cmd line. But I cant 
run clustalw.pl it produces a typical perl error message below :

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Can't locate Bio/Tools/Run/Alignment/Clustalw.pm in @INC (@INC contains: 
/home/httpd/vhosts/xxxx/cgi-bin/modules/bioperl-run-1.4/Bio/Tools/Run/Alignment/ 
/usr/lib/perl5/5.8.3/i386-linux-thread-multi /usr/lib/perl5/5.8.3 
/usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi 
/usr/lib/perl5/site_perl/5.8.2/i386-linux-thread-multi 
/usr/lib/perl5/site_perl/5.8.1/i386-linux-thread-multi 
/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi 
/usr/lib/perl5/site_perl/5.8.3 /usr/lib/perl5/site_perl/5.8.2 
/usr/lib/perl5/site_perl/5.8.1 /usr/lib/perl5/site_perl/5.8.0 
/usr/lib/perl5/site_perl 
/usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi 
/usr/lib/perl5/vendor_perl/5.8.2/i386-linux-thread-multi 
/usr/lib/perl5/vendor_perl/5.8.1/i386-linux-thread-multi 
/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi 
/usr/lib/perl5/vendor_perl/5.8.3 /usr/lib/perl5/vendor_perl/5.8.2 
/usr/lib/perl5/vendor_perl/5.8.1 /usr/lib/perl5/vendor_perl/5.8.0 
/usr/lib/perl5/vendor_perl .) at clustalw.pl line 39. BEGIN 
failed--compilation aborted at clustalw.pl line 39.
------------------------------------------------------------

------------------------------------------------------------
This is the code  from clustalw.pl
------------------------------------------------------------
#!/usr/bin/perl

# PROGRAM  :   
# PURPOSE  : Demonstrate possible uses of 
Bio::Tools::Run::Alignment::Clustalw.pm
# AUTHOR   : Peter Schattner schattner at alum.mit.edu
# CREATED  : Oct 06 2000
# REVISION : $Id: clustalw.pl,v 1.1 2003/07/07 18:20:58 bosborne Exp $
.

# Modify (and un-comment) the following line as required to point to 
clustalw program directory on your system
BEGIN {
 $ENV{CLUSTALDIR} = 
'/home/httpd/vhosts/xxxx/cgi-bin/modules/bioperl-run-1.4/Bio/Tools/Run/Alignment/';
}

use lib 
"/home/httpd/vhosts/xxxx/cgi-bin/modules/bioperl-run-1.4/Bio/Tools/Run/Alignment/";
use Getopt::Long;
use Bio::Tools::Run::Alignment::Clustalw;
use Bio::SimpleAlign;
use Bio::AlignIO;
use Bio::SeqIO;
use strict;

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I would like some information or suggestions for what I can do to get 
this to work.

Cheers
Lisa