[Bioperl-l] problem with swissprot parsin

[Siddhartha Basu]

Hi hilmar
Hilmar Lapp wrote:
> 
> On Friday, October 15, 2004, at 11:39  AM, Siddhartha Basu wrote:
> 
>> Here is the error:
>> ===
>> Use of uninitialized value in substitution (s///) at
>> /usr/lib/perl5/site_perl/5.8.3/Bio/SeqIO/swiss.pm line 856, <GEN0> 
>> line 80.
>> Use of uninitialized value in string eq at
>> /usr/lib/perl5/site_perl/5.8.3/Bio/SeqIO/swiss.pm line 1002, <GEN0> line
>> 154.
>> Use of uninitialized value in string eq at
>> /usr/lib/perl5/site_perl/5.8.3/Bio/SeqIO/swiss.pm line 1002, <GEN0> line
>> 182.
>> Use of uninitialized value in string eq at
>> /usr/lib/perl5/site_perl/5.8.3/Bio/SeqIO/swiss.pm line 1002, <GEN0> line
>> 214.
>> ====
>>
> 
> Note that these are warnings, not errors. 
Yes, those were warnings, sorry for saying errors.

>They should not in any way 
> have negatively affected your script. 
The first of the 4 warnings means
> that for that sequence one of the references wouldn't have the author 
> set. The other three had zero effect other than cluttering the terminal 
> screen.
Thanks for making it clear.
> 
> I fixed the code to make these warnings go away and handle the RA/RG 
> case correctly.
Where can i get it?

-siddhartha

> 
>     -hilmar
>