[Bioperl-l] patch for Bio::SeqFeature::Tools::IDHandler.pm
Aaron J. Mackey
amackey at pcbi.upenn.edu
Wed Oct 13 13:55:10 EDT 2004
done, thanks!
-Aaron
On Oct 13, 2004, at 10:38 AM, Steffen Grossmann wrote:
> Dear all,
>
> I came across a small bug in the Bio::SeqFeature::Tools::IDHandler.pm
> module, which can be corrected by the small patch shown below.
> Actually, $parent is only the ID of the feature, so it doesn't make
> sense to use the method 'add_SeqFeature' on it. The hash %sf_by_ID has
> been created before to map the IDs to the actual features.
>
> 195c195
> < $parent->add_SeqFeature($_);
> ---
> > $sf_by_ID{$parent}->add_SeqFeature($_);
>
> Thanks!
>
> Steffen
>
> --
> %---------------------------------------------%
> % Steffen Grossmann %
> % %
> % Max Planck Institute for Molecular Genetics %
> % Computational Molecular Biology %
> %---------------------------------------------%
> % Ihnestrasse 73 %
> % 14195 Berlin %
> % Germany %
> %---------------------------------------------%
> % Tel: (++49 +30) 8413-1167 %
> % Fax: (++49 +30) 8413-1152 %
> %---------------------------------------------%
>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>
>
--
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania email: amackey at pcbi.upenn.edu
415 S. University Avenue office: 215-898-1205
Philadelphia, PA 19104-6017 fax: 215-746-6697
More information about the Bioperl-l
mailing list