[Bioperl-l] parsing GenScan result

[Brian Osborne]

Yanbin,

What Jason is saying is that the Synopsis is telling you that
Bio::Tools::Prediction::Gene objects are returned, for example. So you'll
need to go that module's documentation and see how to get the appropriate
information from that object.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Jason Stajich
Sent: Wednesday, June 30, 2004 1:49 PM
To: Yanbin Yin
Cc: bioperl-l at bioperl.org
Subject: Re: [Bioperl-l] parsing GenScan result

did you try the SYNOPSIS part of the documentation from
Bio::Tools::Genscan?

Also see the bptutorial.pl which has a genscan example.

-jason
On Thu, 1 Jul 2004, Yanbin Yin wrote:

> Hi,
>
> I am trying to parse GenScan prediction result. I found one example script
written by Brian Osborne. It is very good but I still want to parse out each
exon's sequence and location. Had anyone written this kind of script or
could anyone please tell me how to use Bio::Tools::Genscan to write one?
>
> Thanks in advance!
>
> Yanbin
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu
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