[Bioperl-l] parser for dnadist from the phylip package

martin s9904982 at sms.ed.ac.uk
Tue Jun 29 10:34:34 EDT 2004


Hi, 

I'm looking to run dnadist on a series of multiple sequence alignments
(held as Bio::Align objects).  For protein alignments, the process seems
to be catered for (from what I can tell from the documentation) by 

Bio::Tools::Phylo::Phylip::ProtDist

and 

Bio::Tools::Run::Phylo::Phylip::ProtDist.  

Does anyone know if there's an analogous object for dnadist, or whether
the ProtDist modules could be coerced into working?

Any pointers appreciated. 
-- 
Martin Jones
Blaxter Nematode Genomics Group  
School of Biological Sciences    
Ashworth Laboratories            
University of Edinburgh          
Edinburgh                        
EH9 3JT                          
UK                                   
tel: +44 131 650 7403
web: www.nematodes.org



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