[Bioperl-l] Cannot connect to local ODBA

[Andy Hammer]

I have altered the sample code from the ODBA HOWTO as
follows:
#!/usr/bin/perl

#use strict;
use Bio::Perl;
use Bio::DB::Registry;

$registry = Bio::DB::Registry->new;
$db = $registry->get_database('ncbi');
$seq = $db->get_Seq_by_acc('NM_000367');
print $seq->seq,"\n";

my seqdatabase.ini contains:
[ncbi]
protocol=biosql
location=localhost
dbname=biosql
driver=Pg
port=
user=     
pass=postgres
biodbname=ncbi 

But I get the error:
Can't call method "seq" on an undefined value at
./testdb.pl line 10, <FH> line 20.

I don't think it is connecting to my local db.  The
sample code that points to embl works fine.  My local
biosql database is called ncbi and it loaded fine
using load_seqdatabase.pl provided with bioperl-db. 
Any ideas?



	
		
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