[Bioperl-l] Bio::SeqIO bug

[Brian Osborne]

Michael,

You should enter this as a bug so we don't loose track of it, I confirmed
that this is not fixed in version 1.4. http://bugzilla.bioperl.org/.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of michael watson
(IAH-C)
Sent: Tuesday, June 22, 2004 5:28 AM
To: Bioperl
Subject: [Bioperl-l] Bio::SeqIO bug

Hi

I am using bioperl 1.2.3 on linux.

When converting from GenBank to EMBL for the RefSeq entry NC_002945, the
following conversion occurs for CDS 2450558..2451643:

/product="Probable
nicotinate-nucleotide-dimethylbenzimidazol
phosphoribosyltransferase CobT"

To

FT
roduct="Probablenicotinate-nucleotide-dimethylbenzimidazol
FT                   phosphoribosyltransferase CobT"

Note the missing "p" from the FT entry "product", plus the missing
spaces in the product text (presumably because "\n"s have been removed,
but in this case they should be replaced by spaces)

Rather odd??

Mick

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