[Bioperl-l] Display graphs

[Hoebeke Mark]

Hello,

there is an excellent graph drawing package, called GraphViz, available
at :
	http://www.research.att.com/sw/tools/graphviz/

It takes a textual graph description as input and is capable of
generating graphs, both directed and undirected, in various output
formats.

A Perl module has been developed supplying graph objects usable by
graphviz (bypassing the text file stage) :
	http://search.cpan.org/~lbrocard/GraphViz-1.8/lib/GraphViz.pm


We've been using GraphViz (the ATT toolkit, not the Perl module, but
that could change) for some time to generate IMAP images on our web site
and have been quite pleased with the results. A sample can be found at :
	http://genome.jouy.inra.fr/cgi-bin/spid/drawgraph.cgi?proteins=DnaC


Regards,

Mark

Le dim 13/06/2004 à 16:20, Christian Landry a écrit :
> Hi, 
> 
> I am looking for a perl or bioperl module that I could use to build and
> display graphics of undirected graphs from adjacency matrices or adjacency
> lists. I know about the module GRAPH by Macdonald but this does not produce
> figures. Any ideas?
> 
> Thanks,
> 
> Christian
> 
> 
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