[Bioperl-l] compiling bioperl-ext

[Aaron J. Mackey]

1) Are you starting with a clean build directory?

2) Does installing other compiled Perl modules work for you (e.g. 
Data::Dumper or Storable)?

That's a pretty arcane error, and if the answer to #2 is "no", then I 
don't think we can help you.

-Aaron

On Jun 9, 2004, at 4:32 PM, luisa pugliese wrote:

> Hi to all,
>    looking at the messages of these days I saw there are other people 
> having
> problems compiling bioperl-ext.
> I tryed to do it on AMD64 with Mandrake 9.2 linux distribution and I 
> have
> got the following error:
> +++++++++++++++++++++++++++++++++++++
> LD_RUN_PATH="" gcc  -shared Align.o  -o
> ../blib/arch/auto/Bio/Ext/Align/Align.so libs/libsw.a  -lm
> /usr//bin/ld: libs/libsw.a(aln.o): relocation R_X86_64_32 can not be 
> used
> when making a shared object; recompile with -fPIC
> libs/libsw.a: could not read symbols: Bad value
> +++++++++++++++++++++++++++++++++++++++++
> Does anybody knows what should I do in order to succesfully compile it?
> Thank you to all
> Luisa
> =============================
> Luisa Pugliese, Ph.D.
> luisa.pugliese at safan-bioinformatics.it
> S.A.F.AN. BIOINFORMATICS
> Corso Tazzoli 215/13 -10137 Torino - ITALY
> tel +39 011 3026230
> cell. +39 333 6130644
>
>
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>
--
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania       email:  amackey at pcbi.upenn.edu
415 S. University Avenue         office: 215-898-1205
Philadelphia, PA  19104-6017     fax:    215-746-6697