[Bioperl-l] Getting all thae matrices from transfac
gtg974p at mail.gatech.edu
gtg974p at mail.gatech.edu
Thu Jun 3 14:04:40 EDT 2004
Hi all,
Can someone tell me how to get all the matrices from Local TRANSFAC. The
get_MatrixSet() module works only for Jaspar. I need something like --
my $db = TFBS::DB::FlatFileDir->connect("$jaspardir");
my $matrixset = $newdb->get_MatrixSet(-matrixtype=>"PFM");
my $mx_iterator = $matrixset->Iterator(-sort_by=>'name');
printf("\n %-10s%15s%25s \n",'MatrixID','Name','Length');
while(my $pfm = $mx_iterator->next())
{
printf(" %-10s%15s%25s \n", $pfm->ID, $pfm->name, $pfm->length);
}
for getting all the matrices from TRANSFAC.
Thanks in advance.
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